Irresistibly Fluffy Pumpkin Chocolate Chip Muffins: Your Ultimate Fall Baking Guide
These soft and fluffy Pumpkin Chocolate Chip Muffins are the perfect fall treat, guaranteed to bring warmth and comfort to any autumn day.

Why These Pumpkin Muffins Are So Good (and Uniquely Fluffy)!
As soon as the crisp air of pumpkin season arrived this year, a familiar craving swept over me – not just for *any* pumpkin treat, but for all things pumpkin: pumpkin chocolate chip muffins, spiced pumpkin cookies, creamy pumpkin coffee, and more! While I appreciate the simplicity of recipes like Cake Mix Pumpkin Muffins for a quick fix, I yearned for something a little more special, a muffin with an exceptional texture and depth of flavor. And so, this carefully crafted pumpkin chocolate chip muffin recipe was born.
What makes these muffins stand out from the crowd? There’s a secret ingredient that contributes to their incredibly light, airy, and moist texture: **Greek yogurt**. This unsung hero of baking is my personal go-to for making super soft and airy muffins every single time. It adds a subtle tang, a boost of moisture, and a wonderful structure that elevates these pumpkin treats far beyond your average bakery muffin.
These delightful muffins were inspired by our immensely popular reader favorite, the Greek Yogurt Chocolate Chip Muffins. We took that beloved base and infused it with the quintessential flavors of autumn, adding warm spices and rich pumpkin puree to create the ultimate fall muffin experience. Get ready to bake a batch that will have everyone asking for the recipe!

Essential Ingredients & Notes for the Best Pumpkin Muffins
Crafting the perfect pumpkin chocolate chip muffin starts with understanding the role of each ingredient. Here’s a detailed look at what you’ll need and some helpful notes to ensure your baking success:
- Greek yogurt: We recommend using whole milk unsweetened plain Greek yogurt. The whole milk content contributes to the richness and moistness of the muffins, while the unsweetened aspect gives you full control over the sweetness level. Greek yogurt is truly the star here, providing that tender, fluffy crumb.
- Pumpkin puree: This is crucial – make sure you use canned pumpkin puree, and **not** pumpkin pie filling. Pumpkin pie filling is already spiced and sweetened, which would throw off the balance of this recipe. Look for cans labeled “100% pure pumpkin” or “pumpkin puree.”
- Butter: Unsalted butter, melted and slightly cooled, adds a wonderful richness to the muffins. If you prefer, you can substitute it with an equal amount of olive oil or coconut oil (melted if solid). Olive oil will give a subtle fruity note, while coconut oil offers a delicate tropical aroma, but both will still result in moist muffins.
- Eggs: Large eggs, ideally at room temperature, bind the ingredients together and provide structure. Room temperature eggs also emulsify better with other ingredients, leading to a smoother batter and a more consistent texture in your baked goods.
- Vanilla extract: A good quality vanilla extract enhances all the other flavors in the muffin, particularly the chocolate and pumpkin spices. Don’t skimp on this!
- Spices & leavening agents: This blend is key to that quintessential fall flavor and perfect rise. You’ll need:
- Salt: Balances sweetness and enhances flavor.
- Pumpkin pie spice: The heart of the fall flavor! This blend typically includes cinnamon, nutmeg, ginger, and cloves. If you don’t have it, you can easily make your own by combining these individual spices.
- Baking powder & baking soda: These leavening agents work together with the Greek yogurt and pumpkin to give the muffins their beautiful lift and airy texture.
- Maple Syrup and Brown Sugar: The combination of these two sweeteners is what truly gives these muffins all the cozy fall vibes. Maple syrup adds a unique depth and natural sweetness, while brown sugar contributes to moisture and a delightful caramel-like flavor, creating a more complex and inviting taste profile than white sugar alone.
- All-purpose flour: This provides the main structure of the muffins. For best results, measure your flour by spooning it into your measuring cup and then leveling it off with a straight edge, rather than scooping directly from the bag. This prevents over-packing and ensures a tender muffin.
- Semi-sweet chocolate chips: Semi-sweet chocolate chips offer a perfect balance of sweetness to complement the pumpkin and spices. They melt beautifully within the muffin, creating pockets of gooey chocolate in every bite.

How to Make Pumpkin Chocolate Chip Muffins: Step-by-Step Guide
Baking these irresistibly delicious muffins is a straightforward process. Follow these simple steps for perfect results every time!
Step 1: Prepare Your Dry Ingredients
In a large mixing bowl, thoroughly whisk together the all-purpose flour, salt, baking powder, baking soda, and pumpkin pie spice. Whisking ensures that all the leavening agents and spices are evenly distributed throughout the flour, which is essential for a consistent rise and flavor in your muffins.


Step 2: Combine the Wet Ingredients
In a separate, large bowl, whisk together the wet ingredients: the Greek yogurt, pumpkin puree, melted and slightly cooled butter, eggs, vanilla extract, pure maple syrup, and brown sugar. Whisk until the mixture is completely smooth and well combined. This ensures that the sweeteners are dissolved and all liquid components are evenly incorporated, contributing to the muffin’s moist texture.


Step 3: Gently Combine Wet and Dry Mixtures
Pour the dry ingredients into the bowl with the wet ingredients. Using a rubber spatula, gently mix until *just* combined. It’s crucial not to overmix the batter. Overmixing develops the gluten in the flour, which can lead to tough, dense muffins instead of the soft and fluffy texture we’re aiming for. A few lumps are perfectly fine!


Step 4: Fold in the Chocolate Chips
Add the semi-sweet chocolate chips to the pumpkin muffin batter. Using your rubber spatula, gently fold them in until they are evenly distributed. Again, avoid overmixing to keep the muffins tender.


Step 5: Fill Muffin Tin and Bake
Line a standard 12-cup muffin tin with parchment paper muffin liners. These are fantastic because they eliminate the need for cooking spray and ensure nothing sticks, making for easy removal and cleanup. Distribute the batter evenly into the muffin cups, filling each approximately two-thirds full for beautifully domed tops. For an extra touch, sprinkle a few additional chocolate chips on top of each muffin before baking.
Preheat your oven to 350 degrees Fahrenheit (175°C). Bake the muffins for 21-24 minutes, or until a wooden toothpick inserted into the center of a muffin comes out clean. The baking time may vary slightly depending on your oven, so keep an eye on them towards the end. The muffins should be golden brown and spring back lightly when touched.
Recipe Tip: The Magic of Parchment Paper Liners
We absolutely adore using parchment paper muffin liners for this recipe, and highly recommend them! Unlike traditional paper liners that can sometimes stick, parchment liners create a non-stick barrier that ensures your beautiful muffins release effortlessly every single time. This eliminates the need for greasing or using cooking spray, making cleanup a breeze and preserving the perfect shape of your freshly baked treats.


Once baked, let the muffins cool in the tin for a few minutes before transferring them to a wire rack to cool completely. These are truly the perfect pumpkin muffins: soft and moist, generously filled with warm seasonal spices, and featuring delightful pockets of melted chocolate in every single bite! Enjoy them warm, perhaps with a cup of coffee or tea.

Storing and Freezing Your Pumpkin Muffins
To keep your delicious pumpkin chocolate chip muffins fresh and enjoyable for longer, proper storage is key.
Storing Leftovers: Leftover pumpkin chocolate chip muffins can be stored in an airtight bag or container at room temperature for up to 2-3 days, or in the refrigerator for 4-5 days. While they are delightful fresh out of the oven, they maintain their moisture and flavor remarkably well when stored correctly.
Freezing for Later: For longer storage, these muffins freeze beautifully! Once completely cooled, place them in a single layer on a baking sheet and freeze for about an hour, or until firm. This prevents them from sticking together. Then, transfer the frozen muffins to a freezer-safe airtight bag or container. They will keep well in the freezer for up to 3 months.
Reheating: To enjoy a frozen muffin, simply let it thaw at room temperature for a few hours, or gently warm it in the microwave for 20-30 seconds for that “freshly baked” feel. You can also warm them in a preheated oven at 300°F (150°C) for about 5-10 minutes until heated through.

Frequently Asked Questions About Pumpkin Muffins
Here are answers to some common questions you might have while baking these delightful pumpkin chocolate chip muffins:
Can I make these into mini muffins?
Absolutely, these pumpkin chocolate chip muffins are perfect for mini versions! For mini muffins, simply divide the batter into 24 mini muffin tins, making sure to line them with mini parchment liners if you have them. Bake the mini muffins at 350 degrees Fahrenheit (175°C) for a shorter duration, typically 14-18 minutes, or until a toothpick inserted into the center comes out clean. Keep a close eye on them as mini muffins bake much faster!
Can I use fresh pumpkin puree?
While canned pumpkin puree offers consistent moisture and texture, you can certainly use fresh pumpkin puree. Just be sure to drain any excess liquid from your homemade puree to prevent the muffins from becoming too wet. The consistency of homemade puree can vary, so you might need to adjust baking time slightly.
What if I don’t have pumpkin pie spice?
No problem! You can easily make your own pumpkin pie spice blend. For 1 teaspoon of pumpkin pie spice, combine 1/2 teaspoon ground cinnamon, 1/4 teaspoon ground ginger, 1/8 teaspoon ground nutmeg, and a pinch of ground cloves (or allspice). This homemade blend will infuse your muffins with that irresistible fall aroma.

Customizing Your Muffins: Substitutions and Variations
This recipe is incredibly versatile, allowing for several substitutions and creative variations to suit your taste and dietary needs. Don’t be afraid to experiment!
- Butter alternatives: As mentioned, you can substitute the melted unsalted butter for other fats. Coconut oil (measured first, then melted) imparts a subtle tropical flavor and keeps the muffins moist. Olive oil, or any neutral-flavored cooking oil like canola or vegetable oil, works well if you prefer a less pronounced flavor profile than butter. Each will slightly alter the final taste, but the texture will remain wonderfully soft.
- Chocolate Chips variations: While semi-sweet chocolate chips are a classic choice, feel free to experiment with different types. Use milk chocolate chips for a sweeter, creamier bite, or dark chocolate chips for a richer, more intense chocolate flavor. Mini chocolate chips disperse more evenly throughout the muffin, ensuring chocolate in every single crumb. Chocolate chunks can also provide lovely pockets of melted chocolate.
- Flour alternatives: You can substitute the all-purpose flour for whole wheat pastry flour. This will add a slight nutty flavor and a boost of fiber without making the muffins too dense, as whole wheat pastry flour is milled more finely than regular whole wheat flour. This recipe has not been extensively tested with gluten-free flour, but many readers have had success with a good quality 1:1 gluten-free baking blend. Look for blends that contain xanthan gum for best results.
- Add-ins and Toppings:
- Nuts: Fold in 1/2 cup of chopped pecans or walnuts with the chocolate chips for added crunch and flavor.
- Dried Fruit: Dried cranberries or raisins can add a lovely chewy texture and tart sweetness that pairs wonderfully with pumpkin.
- Streusel Topping: For an extra decadent touch, mix together 1/4 cup brown sugar, 2 tablespoons flour, 1/4 teaspoon cinnamon, and 1 tablespoon cold butter (cut into small pieces). Sprinkle this crumbly mixture over the tops of the muffins before baking.
- Cream Cheese Swirl: Mix 4 oz softened cream cheese with 2 tablespoons sugar and 1 teaspoon vanilla. Dollop small amounts over the batter in the muffin tins and swirl gently with a toothpick before baking.

More Irresistible Pumpkin Recipes for Fall
If you’re anything like us, once pumpkin season hits, you can’t get enough! Here are some more of our favorite pumpkin-infused recipes to keep your autumn baking adventures exciting and delicious:
- Pumpkin Mini Muffins: Perfect for small hands or quick bites.
- Classic Pumpkin Bread: A timeless, moist loaf that’s great for gifting or sharing.
- Chewy Pumpkin Chocolate Chip Cookies: Soft, spiced cookies studded with chocolate.
- Decadent Pumpkin Cream Pie: A lighter, creamier take on traditional pumpkin pie.
- No-Bake Pumpkin Cheesecake Bars: Easy, impressive, and utterly delicious.
- Healthy Pumpkin Protein Balls: A great snack for a boost of fall flavor and energy.
- Vegan Pumpkin Chocolate Chip Cookies: A plant-based option that doesn’t compromise on flavor or texture.


Pumpkin Chocolate Chip Muffins
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Ingredients
- 1/2 cup plain unsweetened whole Greek yogurt
- 1/2 cup pumpkin puree
- 1/4 cup unsalted butter, melted and slightly cooled
- 2 eggs
- 2 teaspoons vanilla extract
- 1/4 teaspoon salt
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 1 teaspoon pumpkin pie spice
- 1/4 cup pure maple syrup
- 1/4 cup brown sugar
- 1 1/2 cups all-purpose flour
- 1 cup semi-sweet chocolate chips
Instructions
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Preheat your oven to 350 degrees Fahrenheit (175°C).
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In a large bowl, whisk together the Greek yogurt, pumpkin puree, melted and slightly cooled butter, eggs, vanilla extract, pure maple syrup, and brown sugar until smooth.
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In a separate bowl, whisk together the all-purpose flour, salt, baking powder, baking soda, and pumpkin pie spice until thoroughly combined.
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Add the dry ingredients to the wet ingredients. Mix with a rubber spatula until *just* combined. Be careful not to overmix; a few lumps are fine.
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Gently fold in the semi-sweet chocolate chips until they are evenly distributed throughout the batter.
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Line a 12-cup muffin tin with parchment paper muffin liners.
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Distribute the batter evenly into the muffin cups, filling each approximately two-thirds full. Top each muffin with a few additional chocolate chips for an appealing finish.
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Bake the muffins at 350 degrees Fahrenheit (175°C) for 21 – 24 minutes, or until a wooden toothpick inserted into the center comes out clean and the tops are golden brown.
Nutrition
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